darren

darren pushed to main at darren/lb_eda

2025-10-17 09:45:49 +00:00

c5a390638f feat: addition of coverage analysis

darren pushed to main at darren/lb_eda

2025-10-17 07:40:58 +00:00

331ccf066e docs: requirements added for marimo books

darren pushed to main at darren/lb_eda

2025-10-17 07:30:18 +00:00

7a35a49084 feat: analysis of low cfDNA input updated for comparison to QG

darren pushed to main at darren/lb_eda

2025-09-24 16:16:13 +00:00

2581de3dc7 feat: scripts to get coverage across panel added

d9cbe4f998 feat: furtehr analysis added

Compare 2 commits »

darren pushed to main at darren/lb_eda

2025-09-23 14:21:08 +00:00

39ef0b93ea feat: analysis completed in the eda on stats and mutations

darren pushed to main at darren/lb_eda

2025-09-22 15:31:17 +00:00

e03ede9c28 feat: eda analysis continued and samples from QG search added

darren pushed to main at darren/lb_eda

2025-09-21 20:29:00 +00:00

ab15df85ad feat: added code for eda with marimo

darren created repository darren/lb_eda

2025-09-19 11:54:27 +00:00

darren pushed to master at darren/reproduce_setup

2025-09-19 11:50:18 +00:00

a462b2d874 feat: code added for testing comparability

darren pushed to master at darren/pgx_nat2_issue

2025-09-19 11:49:36 +00:00

877c736ce5 feat: update notebook code

darren pushed to master at darren/coriell_samples

2025-09-09 09:50:50 +00:00

2a9a240e8a feat: code to subset the ensembl gtf added

darren pushed to master at darren/coriell_samples

2025-09-08 18:46:40 +00:00

485c1ea0b5 feat: script to download and filter coriell wgs BAMs

darren pushed to master at darren/coriell_samples

2025-09-08 11:54:45 +00:00

66d97b290b feat: eda of the CNV coriell samples

darren pushed to master at darren/coriell_samples

2025-09-08 11:53:56 +00:00

205151bf31 fix: data and marimo folders added to gitignore

darren created repository darren/coriell_samples

2025-09-08 11:44:55 +00:00

darren pushed to master at darren/UoAz_sample_list

2025-09-03 11:31:24 +00:00

c00ff64771 feat: code added for parsing the sample list by UoAz samples

darren created repository darren/UoAz_sample_list

2025-09-03 11:29:15 +00:00

darren pushed to master at darren/pgx_nat2_issue

2025-08-28 10:08:44 +00:00

cb80d69877 feat: code added that updates the NAT2 whitelist in the pgx-engine

darren pushed to master at darren/pgx_nat2_issue

2025-08-26 10:41:57 +00:00

4fe9a42a56 feat: code to validate the NAT2 json made by scripts in teh pgx-engine added

darren pushed to master at darren/pgx_nat2_issue

2025-08-21 15:27:43 +00:00

68ae6746e0 eda: look into the variant allele issue that caused Ajit's script to break