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pg-main from prod server added

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Darren Wight
2025-08-18 12:03:55 +02:00
parent add456f0e7
commit f66cd01b21
956 changed files with 934400 additions and 0 deletions
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##fileformat=VCFv4.2
##contig=<ID=10,length=135534747>
##fileDate=20200316
##reference=reference.fa
##phasing=true
##INFO=<ID=COMPACT_TP,Number=.,Type=String,Description="">
##INFO=<ID=SEQ,Number=1,Type=String,Description="Sequence to insert.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVSIZE,Number=.,Type=Integer,Description="Absolute value of SVLEN">
##INFO=<ID=NCLUSTERS,Number=1,Type=Integer,Description="Number of clipped read clusters used for prediction">
##INFO=<ID=NUM_MERGED_SVS,Number=1,Type=Integer,Description="Number of merged SVs.">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=INV3,Number=0,Type=Flag,Description="Inversion breakends open 3' of reported location">
##INFO=<ID=INV5,Number=0,Type=Flag,Description="Inversion breakends open 5' of reported location">
#CHROM POS ID REF ALT QUAL FILTER INFO
10 96796529 . T <DEL> 99 . IMPRECISE;SVTYPE=DEL;END=96829255;SVLEN=;SVSIZE=32727;NCLUSTERS=10;CIPOS=-11,11;CIEND=-8,8

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##fileformat=VCFv4.2
##contig=<ID=10,length=135534747>
##fileDate=20200316
##reference=reference.fa
##phasing=true
##INFO=<ID=COMPACT_TP,Number=.,Type=String,Description="">
##INFO=<ID=SEQ,Number=1,Type=String,Description="Sequence to insert.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVSIZE,Number=.,Type=Integer,Description="Absolute value of SVLEN">
##INFO=<ID=NCLUSTERS,Number=1,Type=Integer,Description="Number of clipped read clusters used for prediction">
##INFO=<ID=NUM_MERGED_SVS,Number=1,Type=Integer,Description="Number of merged SVs.">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=INV3,Number=0,Type=Flag,Description="Inversion breakends open 3' of reported location">
##INFO=<ID=INV5,Number=0,Type=Flag,Description="Inversion breakends open 5' of reported location">
#CHROM POS ID REF ALT QUAL FILTER INFO
10 96522463 . A <DEL> 99 . IMPRECISE;SVTYPE=DEL;END=96612671;SVLEN=;SVSIZE=90209;NCLUSTERS=10;CIPOS=-11,11;CIEND=-8,8

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##fileformat=VCFv4.2
##contig=<ID=10,length=135534747>
##fileDate=20200316
##reference=reference.fa
##phasing=true
##INFO=<ID=COMPACT_TP,Number=.,Type=String,Description="">
##INFO=<ID=SEQ,Number=1,Type=String,Description="Sequence to insert.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVSIZE,Number=.,Type=Integer,Description="Absolute value of SVLEN">
##INFO=<ID=NCLUSTERS,Number=1,Type=Integer,Description="Number of clipped read clusters used for prediction">
##INFO=<ID=NUM_MERGED_SVS,Number=1,Type=Integer,Description="Number of merged SVs.">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=INV3,Number=0,Type=Flag,Description="Inversion breakends open 3' of reported location">
##INFO=<ID=INV5,Number=0,Type=Flag,Description="Inversion breakends open 5' of reported location">
#CHROM POS ID REF ALT QUAL FILTER INFO
10 96796529 . T <DEL> 99 . IMPRECISE;SVTYPE=DUP;SVLEN=+32727;SVSIZE=32727

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##fileformat=VCFv4.2
##contig=<ID=10,length=135534747>
##fileDate=20200316
##reference=reference.fa
##phasing=true
##INFO=<ID=COMPACT_TP,Number=.,Type=String,Description="">
##INFO=<ID=SEQ,Number=1,Type=String,Description="Sequence to insert.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVSIZE,Number=.,Type=Integer,Description="Absolute value of SVLEN">
##INFO=<ID=NCLUSTERS,Number=1,Type=Integer,Description="Number of clipped read clusters used for prediction">
##INFO=<ID=NUM_MERGED_SVS,Number=1,Type=Integer,Description="Number of merged SVs.">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=INV3,Number=0,Type=Flag,Description="Inversion breakends open 3' of reported location">
##INFO=<ID=INV5,Number=0,Type=Flag,Description="Inversion breakends open 5' of reported location">
#CHROM POS ID REF ALT QUAL FILTER INFO
10 96522463 . A <DEL> 99 . IMPRECISE;SVTYPE=DUP;SVLEN=+90209;SVSIZE=90209

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10 96796529 96829255
12 48235320 48298814
7 55086678 55279262

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10 96522463 96612671
12 48235320 48298814
7 55086678 55279262

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chr10 96796529 96829255
chr12 48235320 48298814
chr7 55086678 55279262

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chr10 95036772 95069497
chr12 47841537 47905022
chr7 55019017 55211628