25 lines
2.0 KiB
Plaintext
25 lines
2.0 KiB
Plaintext
##fileformat=VCFv4.2
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##contig=<ID=10,length=135534747>
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##fileDate=20200316
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##reference=reference.fa
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##phasing=true
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##INFO=<ID=COMPACT_TP,Number=.,Type=String,Description="">
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##INFO=<ID=SEQ,Number=1,Type=String,Description="Sequence to insert.">
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##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
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##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
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##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
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##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
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##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
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##INFO=<ID=SVSIZE,Number=.,Type=Integer,Description="Absolute value of SVLEN">
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##INFO=<ID=NCLUSTERS,Number=1,Type=Integer,Description="Number of clipped read clusters used for prediction">
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##INFO=<ID=NUM_MERGED_SVS,Number=1,Type=Integer,Description="Number of merged SVs.">
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##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
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##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
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##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
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##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
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##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
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##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
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##INFO=<ID=INV3,Number=0,Type=Flag,Description="Inversion breakends open 3' of reported location">
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##INFO=<ID=INV5,Number=0,Type=Flag,Description="Inversion breakends open 5' of reported location">
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#CHROM POS ID REF ALT QUAL FILTER INFO
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10 96796529 . T <DEL> 99 . IMPRECISE;SVTYPE=DEL;END=96829255;SVLEN=;SVSIZE=32727;NCLUSTERS=10;CIPOS=-11,11;CIEND=-8,8 |