eda: look into the variant allele issue that caused Ajit's script to break
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cmds.sh
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13
cmds.sh
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# create the translation table after fixing the issue with the variant allele encoding
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python /home/darren/Documents/2_repos/serenomica/pgx-engine/scripts/pharmvar_to_translation_table.py \
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data/NAT2-6.2.15/GRCh38/NAT2.NC_000008.11.haplotypes.tsv \
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"NAT2" \
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"chr8"
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# create the json (needed to change the saving location)
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python /home/darren/Documents/2_repos/serenomica/pgx-engine/scripts/translation_to_json.py \
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temp_NAT2_translation_table.tsv \
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"NAT2" \
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"chr8" \
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"GRCh38" \
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"NC_000008.11"
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