14 lines
526 B
Bash
14 lines
526 B
Bash
# create the translation table after fixing the issue with the variant allele encoding
|
|
python /home/darren/Documents/2_repos/serenomica/pgx-engine/scripts/pharmvar_to_translation_table.py \
|
|
data/NAT2-6.2.15/GRCh38/NAT2.NC_000008.11.haplotypes.tsv \
|
|
"NAT2" \
|
|
"chr8"
|
|
|
|
# create the json (needed to change the saving location)
|
|
python /home/darren/Documents/2_repos/serenomica/pgx-engine/scripts/translation_to_json.py \
|
|
temp_NAT2_translation_table.tsv \
|
|
"NAT2" \
|
|
"chr8" \
|
|
"GRCh38" \
|
|
"NC_000008.11"
|