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reproduce_setup/pgx-main/tests/simulations/nextflow.config

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params {
in_hap1 = "/path/to/haplotype_files/*.vcf.gz"
in_hap2 = "/path/to/haplotype_files/*.p.vcf.gz"
out_dir = "/path/to/output_directory"
}
process {
withLabel: big_mem {
cpus = 8
memory = 32.GB
}
}
profiles {
// For execution on a local machine, no containerization. -- Default
standard {
process.executor = 'local'
}
// For execution on a SLURM scheduler, no containerization.
slurm {
process.executor = 'slurm'
process.queue = 'batch'
}
}