13 lines
318 B
Bash
13 lines
318 B
Bash
#!/bin/bash
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export NXF_DEFAULT_DSL=1
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while read g; do
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echo "Run StellarPGx for all samples and gene: ${g^^}"
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nextflow run main.nf -profile standard --build hg38 --gene $g
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echo 'done. Parsing results...'
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for f in results/$g/alleles/* ; do python3 stellar_parser.py $f; done
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done < genes.txt
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#rm -r results/*
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