params { // User-defined parameters // reference genome ref_file = "$PWD/tests/reference/hg38/chr22_hg38.fasta" // BAM/CRAM file(s) and respective indexes in_bam = "$PWD/tests/samples/hg38/HG03130*{bam,bai}" // Output directoy (Default is $PWD/results) out_dir = "$PWD/results" // DO NOT modify these lines gene = "cyp2d6" res_init = "$PWD/tests/resources" }