pgx-main from prod added
This commit is contained in:
0
pgx-main/database/cyp4f2/hg38/a_scores.dbs
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0
pgx-main/database/cyp4f2/hg38/a_scores.dbs
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120
pgx-main/database/cyp4f2/hg38/diplo_db_debugged2.dbs
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120
pgx-main/database/cyp4f2/hg38/diplo_db_debugged2.dbs
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@@ -0,0 +1,120 @@
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10.v1_10.v1 15895560~G>T~1/1 15895560~G>T
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10.v1_11.v1 15895527~G>A~0/1;15895560~G>T~0/1 15895527~G>A;15895560~G>T
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10.v1_12.v1 15892541~C>T~0/1;15895560~G>T~0/1 15892541~C>T;15895560~G>T
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10.v1_13.v1 15889671~C>A~0/1;15895560~G>T~0/1 15889671~C>A;15895560~G>T
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10.v1_14.v1 15886018~G>C~0/1;15895560~G>T~0/1 15886018~G>C;15895560~G>T
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10.v1_15.v1 15879412~C>T~0/1;15895560~G>T~0/1 15879412~C>T;15895560~G>T
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10.v1_2.v1 15895560~G>T~0/1;15897578~A>C~0/1 15895560~G>T;15897578~A>C
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10.v1_3.v1 15879621~C>T~0/1;15895560~G>T~0/1 15879621~C>T;15895560~G>T
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10.v1_4.v1 15879621~C>T~0/1;15895560~G>T~0/1;15897578~A>C~0/1 15879621~C>T;15895560~G>T;15897578~A>C
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10.v1_5.v1 15878779~G>T~0/1;15895560~G>T~0/1 15878779~G>T;15895560~G>T
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10.v1_6.v1 15890405~C>A~0/1;15895560~G>T~0/1 15890405~C>A;15895560~G>T
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10.v1_7.v1 15895560~G>T~0/1;15897566~C>G~0/1 15895560~G>T;15897566~C>G
|
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10.v1_8.v1 15895560~G>T~0/1;15897473~G>A~0/1 15895560~G>T;15897473~G>A
|
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10.v1_9.v1 15895560~G>T~0/1;15897466~C>T~0/1 15895560~G>T;15897466~C>T
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11.v1_11.v1 15895527~G>A~1/1 15895527~G>A
|
||||
11.v1_12.v1 15892541~C>T~0/1;15895527~G>A~0/1 15892541~C>T;15895527~G>A
|
||||
11.v1_13.v1 15889671~C>A~0/1;15895527~G>A~0/1 15889671~C>A;15895527~G>A
|
||||
11.v1_14.v1 15886018~G>C~0/1;15895527~G>A~0/1 15886018~G>C;15895527~G>A
|
||||
11.v1_15.v1 15879412~C>T~0/1;15895527~G>A~0/1 15879412~C>T;15895527~G>A
|
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11.v1_2.v1 15895527~G>A~0/1;15897578~A>C~0/1 15895527~G>A;15897578~A>C
|
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11.v1_3.v1 15879621~C>T~0/1;15895527~G>A~0/1 15879621~C>T;15895527~G>A
|
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11.v1_4.v1 15879621~C>T~0/1;15895527~G>A~0/1;15897578~A>C~0/1 15879621~C>T;15895527~G>A;15897578~A>C
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11.v1_5.v1 15878779~G>T~0/1;15895527~G>A~0/1 15878779~G>T;15895527~G>A
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11.v1_6.v1 15890405~C>A~0/1;15895527~G>A~0/1 15890405~C>A;15895527~G>A
|
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11.v1_7.v1 15895527~G>A~0/1;15897566~C>G~0/1 15895527~G>A;15897566~C>G
|
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11.v1_8.v1 15895527~G>A~0/1;15897473~G>A~0/1 15895527~G>A;15897473~G>A
|
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11.v1_9.v1 15895527~G>A~0/1;15897466~C>T~0/1 15895527~G>A;15897466~C>T
|
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12.v1_12.v1 15892541~C>T~1/1 15892541~C>T
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12.v1_13.v1 15889671~C>A~0/1;15892541~C>T~0/1 15889671~C>A;15892541~C>T
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12.v1_14.v1 15886018~G>C~0/1;15892541~C>T~0/1 15886018~G>C;15892541~C>T
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12.v1_15.v1 15879412~C>T~0/1;15892541~C>T~0/1 15879412~C>T;15892541~C>T
|
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12.v1_2.v1 15892541~C>T~0/1;15897578~A>C~0/1 15892541~C>T;15897578~A>C
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12.v1_3.v1 15879621~C>T~0/1;15892541~C>T~0/1 15879621~C>T;15892541~C>T
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12.v1_4.v1 15879621~C>T~0/1;15892541~C>T~0/1;15897578~A>C~0/1 15879621~C>T;15892541~C>T;15897578~A>C
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12.v1_5.v1 15878779~G>T~0/1;15892541~C>T~0/1 15878779~G>T;15892541~C>T
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12.v1_6.v1 15890405~C>A~0/1;15892541~C>T~0/1 15890405~C>A;15892541~C>T
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12.v1_7.v1 15892541~C>T~0/1;15897566~C>G~0/1 15892541~C>T;15897566~C>G
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12.v1_8.v1 15892541~C>T~0/1;15897473~G>A~0/1 15892541~C>T;15897473~G>A
|
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12.v1_9.v1 15892541~C>T~0/1;15897466~C>T~0/1 15892541~C>T;15897466~C>T
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13.v1_13.v1 15889671~C>A~1/1 15889671~C>A
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13.v1_14.v1 15886018~G>C~0/1;15889671~C>A~0/1 15886018~G>C;15889671~C>A
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13.v1_15.v1 15879412~C>T~0/1;15889671~C>A~0/1 15879412~C>T;15889671~C>A
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13.v1_2.v1 15889671~C>A~0/1;15897578~A>C~0/1 15889671~C>A;15897578~A>C
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13.v1_3.v1 15879621~C>T~0/1;15889671~C>A~0/1 15879621~C>T;15889671~C>A
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13.v1_4.v1 15879621~C>T~0/1;15889671~C>A~0/1;15897578~A>C~0/1 15879621~C>T;15889671~C>A;15897578~A>C
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13.v1_5.v1 15878779~G>T~0/1;15889671~C>A~0/1 15878779~G>T;15889671~C>A
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13.v1_6.v1 15889671~C>A~0/1;15890405~C>A~0/1 15889671~C>A;15890405~C>A
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13.v1_7.v1 15889671~C>A~0/1;15897566~C>G~0/1 15889671~C>A;15897566~C>G
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13.v1_8.v1 15889671~C>A~0/1;15897473~G>A~0/1 15889671~C>A;15897473~G>A
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13.v1_9.v1 15889671~C>A~0/1;15897466~C>T~0/1 15889671~C>A;15897466~C>T
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14.v1_14.v1 15886018~G>C~1/1 15886018~G>C
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14.v1_15.v1 15879412~C>T~0/1;15886018~G>C~0/1 15879412~C>T;15886018~G>C
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14.v1_2.v1 15886018~G>C~0/1;15897578~A>C~0/1 15886018~G>C;15897578~A>C
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14.v1_3.v1 15879621~C>T~0/1;15886018~G>C~0/1 15879621~C>T;15886018~G>C
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14.v1_4.v1 15879621~C>T~0/1;15886018~G>C~0/1;15897578~A>C~0/1 15879621~C>T;15886018~G>C;15897578~A>C
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14.v1_5.v1 15878779~G>T~0/1;15886018~G>C~0/1 15878779~G>T;15886018~G>C
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14.v1_6.v1 15886018~G>C~0/1;15890405~C>A~0/1 15886018~G>C;15890405~C>A
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14.v1_7.v1 15886018~G>C~0/1;15897566~C>G~0/1 15886018~G>C;15897566~C>G
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14.v1_8.v1 15886018~G>C~0/1;15897473~G>A~0/1 15886018~G>C;15897473~G>A
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14.v1_9.v1 15886018~G>C~0/1;15897466~C>T~0/1 15886018~G>C;15897466~C>T
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15.v1_15.v1 15879412~C>T~1/1 15879412~C>T
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15.v1_2.v1 15879412~C>T~0/1;15897578~A>C~0/1 15879412~C>T;15897578~A>C
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15.v1_3.v1 15879412~C>T~0/1;15879621~C>T~0/1 15879412~C>T;15879621~C>T
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15.v1_4.v1 15879412~C>T~0/1;15879621~C>T~0/1;15897578~A>C~0/1 15879412~C>T;15879621~C>T;15897578~A>C
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15.v1_5.v1 15878779~G>T~0/1;15879412~C>T~0/1 15878779~G>T;15879412~C>T
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15.v1_6.v1 15879412~C>T~0/1;15890405~C>A~0/1 15879412~C>T;15890405~C>A
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15.v1_7.v1 15879412~C>T~0/1;15897566~C>G~0/1 15879412~C>T;15897566~C>G
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15.v1_8.v1 15879412~C>T~0/1;15897473~G>A~0/1 15879412~C>T;15897473~G>A
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15.v1_9.v1 15879412~C>T~0/1;15897466~C>T~0/1 15879412~C>T;15897466~C>T
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1.v1_10.v1 15895560~G>T~0/1 15895560~G>T
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1.v1_11.v1 15895527~G>A~0/1 15895527~G>A
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1.v1_12.v1 15892541~C>T~0/1 15892541~C>T
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1.v1_13.v1 15889671~C>A~0/1 15889671~C>A
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1.v1_14.v1 15886018~G>C~0/1 15886018~G>C
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1.v1_15.v1 15879412~C>T~0/1 15879412~C>T
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1.v1_1.v1 ref_diplo ref_diplo
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1.v1_2.v1 15897578~A>C~0/1 15897578~A>C
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1.v1_3.v1 15879621~C>T~0/1 15879621~C>T
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1.v1_4.v1 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T;15897578~A>C
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1.v1_5.v1 15878779~G>T~0/1 15878779~G>T
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1.v1_6.v1 15890405~C>A~0/1 15890405~C>A
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1.v1_7.v1 15897566~C>G~0/1 15897566~C>G
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1.v1_8.v1 15897473~G>A~0/1 15897473~G>A
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1.v1_9.v1 15897466~C>T~0/1 15897466~C>T
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2.v1_2.v1 15897578~A>C~1/1 15897578~A>C
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2.v1_3.v1 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T;15897578~A>C
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2.v1_4.v1 15879621~C>T~0/1;15897578~A>C~1/1 15879621~C>T;15897578~A>C
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2.v1_5.v1 15878779~G>T~0/1;15897578~A>C~0/1 15878779~G>T;15897578~A>C
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2.v1_6.v1 15890405~C>A~0/1;15897578~A>C~0/1 15890405~C>A;15897578~A>C
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2.v1_7.v1 15897566~C>G~0/1;15897578~A>C~0/1 15897566~C>G;15897578~A>C
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2.v1_8.v1 15897473~G>A~0/1;15897578~A>C~0/1 15897473~G>A;15897578~A>C
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2.v1_9.v1 15897466~C>T~0/1;15897578~A>C~0/1 15897466~C>T;15897578~A>C
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3.v1_3.v1 15879621~C>T~1/1 15879621~C>T
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3.v1_4.v1 15879621~C>T~1/1;15897578~A>C~0/1 15879621~C>T;15897578~A>C
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3.v1_5.v1 15878779~G>T~0/1;15879621~C>T~0/1 15878779~G>T;15879621~C>T
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3.v1_6.v1 15879621~C>T~0/1;15890405~C>A~0/1 15879621~C>T;15890405~C>A
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3.v1_7.v1 15879621~C>T~0/1;15897566~C>G~0/1 15879621~C>T;15897566~C>G
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3.v1_8.v1 15879621~C>T~0/1;15897473~G>A~0/1 15879621~C>T;15897473~G>A
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3.v1_9.v1 15879621~C>T~0/1;15897466~C>T~0/1 15879621~C>T;15897466~C>T
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4.v1_4.v1 15879621~C>T~1/1;15897578~A>C~1/1 15879621~C>T;15897578~A>C
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4.v1_5.v1 15878779~G>T~0/1;15879621~C>T~0/1;15897578~A>C~0/1 15878779~G>T;15879621~C>T;15897578~A>C
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4.v1_6.v1 15879621~C>T~0/1;15890405~C>A~0/1;15897578~A>C~0/1 15879621~C>T;15890405~C>A;15897578~A>C
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4.v1_7.v1 15879621~C>T~0/1;15897566~C>G~0/1;15897578~A>C~0/1 15879621~C>T;15897566~C>G;15897578~A>C
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4.v1_8.v1 15879621~C>T~0/1;15897473~G>A~0/1;15897578~A>C~0/1 15879621~C>T;15897473~G>A;15897578~A>C
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4.v1_9.v1 15879621~C>T~0/1;15897466~C>T~0/1;15897578~A>C~0/1 15879621~C>T;15897466~C>T;15897578~A>C
|
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5.v1_5.v1 15878779~G>T~1/1 15878779~G>T
|
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5.v1_6.v1 15878779~G>T~0/1;15890405~C>A~0/1 15878779~G>T;15890405~C>A
|
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5.v1_7.v1 15878779~G>T~0/1;15897566~C>G~0/1 15878779~G>T;15897566~C>G
|
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5.v1_8.v1 15878779~G>T~0/1;15897473~G>A~0/1 15878779~G>T;15897473~G>A
|
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5.v1_9.v1 15878779~G>T~0/1;15897466~C>T~0/1 15878779~G>T;15897466~C>T
|
||||
6.v1_6.v1 15890405~C>A~1/1 15890405~C>A
|
||||
6.v1_7.v1 15890405~C>A~0/1;15897566~C>G~0/1 15890405~C>A;15897566~C>G
|
||||
6.v1_8.v1 15890405~C>A~0/1;15897473~G>A~0/1 15890405~C>A;15897473~G>A
|
||||
6.v1_9.v1 15890405~C>A~0/1;15897466~C>T~0/1 15890405~C>A;15897466~C>T
|
||||
7.v1_7.v1 15897566~C>G~1/1 15897566~C>G
|
||||
7.v1_8.v1 15897473~G>A~0/1;15897566~C>G~0/1 15897473~G>A;15897566~C>G
|
||||
7.v1_9.v1 15897466~C>T~0/1;15897566~C>G~0/1 15897466~C>T;15897566~C>G
|
||||
8.v1_8.v1 15897473~G>A~1/1 15897473~G>A
|
||||
8.v1_9.v1 15897466~C>T~0/1;15897473~G>A~0/1 15897466~C>T;15897473~G>A
|
||||
9.v1_9.v1 15897466~C>T~1/1 15897466~C>T
|
||||
14
pgx-main/database/cyp4f2/hg38/genotypes4.dbs
Normal file
14
pgx-main/database/cyp4f2/hg38/genotypes4.dbs
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@@ -0,0 +1,14 @@
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1.v1_4.v1 1.001_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1
|
||||
1.v1_4.v1 1.002_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15878595~C>T~0/1;15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1
|
||||
1.v1_4.v1 1.003_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15878595~C>T~0/1;15879621~C>T~0/1;15886010~G>A~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1
|
||||
1.v1_4.v1 1.004_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15878595~C>T~0/1;15878644~A>G~0/1;15879621~C>T~0/1;15886010~G>A~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1
|
||||
1.v1_4.v1 1.005_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~1/1;15897578~A>C~0/1;15898317~G>T~0/1
|
||||
1.v1_4.v1 1.006_4.001 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898053~C>T~0/1;15898317~G>T~0/1
|
||||
2.v1_3.v1 2.001_3.001 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.002_3.001 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15895513~G>A~0/1;15895570~T>G~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.001_3.002 15879621~C>T~0/1;15897578~A>C~0/1 15878595~C>T~0/1;15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.001_3.003 15879621~C>T~0/1;15897578~A>C~0/1 15878699~G>T~0/1;15879621~C>T~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.001_3.004 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15885962~T>C~0/1;15895603~G>A~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898317~G>T~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.002_3.002 15879621~C>T~0/1;15897578~A>C~0/1 15878595~C>T~0/1;15879621~C>T~0/1;15895513~G>A~0/1;15895570~T>G~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.002_3.003 15879621~C>T~0/1;15897578~A>C~0/1 15878699~G>T~0/1;15879621~C>T~0/1;15895513~G>A~0/1;15895570~T>G~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
2.v1_3.v1 2.002_3.004 15879621~C>T~0/1;15897578~A>C~0/1 15879621~C>T~0/1;15885962~T>C~0/1;15895513~G>A~0/1;15895570~T>G~0/1;15897447~T>C~0/1;15897578~A>C~0/1;15898323~G>A~0/1;15898324~G>T~0/1
|
||||
15
pgx-main/database/cyp4f2/hg38/haps_var_new.dbs
Normal file
15
pgx-main/database/cyp4f2/hg38/haps_var_new.dbs
Normal file
@@ -0,0 +1,15 @@
|
||||
*10 10.v1 15895560~G>T
|
||||
*11 11.v1 15895527~G>A
|
||||
*12 12.v1 15892541~C>T
|
||||
*13 13.v1 15889671~C>A
|
||||
*14 14.v1 15886018~G>C
|
||||
*15 15.v1 15879412~C>T
|
||||
*1 1.v1 ref_haplo
|
||||
*2 2.v1 15897578~A>C
|
||||
*3 3.v1 15879621~C>T
|
||||
*4 4.v1 15879621~C>T;15897578~A>C
|
||||
*5 5.v1 15878779~G>T
|
||||
*6 6.v1 15890405~C>A
|
||||
*7 7.v1 15897566~C>G
|
||||
*8 8.v1 15897473~G>A
|
||||
*9 9.v1 15897466~C>T
|
||||
Reference in New Issue
Block a user