removed pgx-main

pgx-main/scripts/novel/core_var.py

@@ -1,26 +0,0 @@
-#!/usr/bin/env/ python3
-
-import os
-import sys
-
-annot_file = sys.argv[1]
-gene_symbol = sys.argv[2]
-transcript = sys.argv[3]
-
-var_conseq = ["missense", "frameshift", "stop_gained", "splice_donor", "splice_acceptor", "inframe_insertion", "inframe_deletion", "start_lost", "stop_lost"] 
-
-for line in open(annot_file, "r"):
-    line = line.strip()
-
-    if line.startswith("#"):
-        pass
-    
-    else:
-        for i in var_conseq:
-            pattern = i + "|" + gene_symbol + "|" + transcript
-            
-            if pattern in line:
-                print(line)
-
-            else:
-                pass