removed pgx-main

This commit is contained in:
2025-08-18 12:05:31 +02:00
parent f66cd01b21
commit fcb0e9aa4c
956 changed files with 0 additions and 934400 deletions

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@@ -1,12 +0,0 @@
#!/bin/bash
export NXF_DEFAULT_DSL=1
while read g; do
echo "Run StellarPGx for all samples and gene: ${g^^}"
nextflow run main.nf -profile standard --build hg38 --gene $g
echo 'done. Parsing results...'
for f in results/$g/alleles/* ; do python3 stellar_parser.py $f; done
done < genes.txt
#rm -r results/*