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pg-main from prod server added

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Darren Wight
2025-08-18 12:03:55 +02:00
parent add456f0e7
commit f66cd01b21
956 changed files with 934400 additions and 0 deletions
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--------------------------------------------
CYP2D6 Star Allele Calling with StellarPGx
--------------------------------------------
Initially computed CN = 1
Sample core variants:
42126611~C>G~1/1;42127526~C>T~1/1;42128945~C>T~1/1;42129809~T>C~1/1;42129819~G>T~1/1;42130692~G>A~1/1
Candidate alleles:
['4.v7_4.v7']
Result:
*5/*4
Activity score:
0.0
Metaboliser status:
Poor metaboliser (PM)

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CYP2D6 *5/*4
1 CYP2D6 *5/*4

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s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-11B-20Dec2022_S27.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-12B-20Dec2022_S28.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-13B-20Dec2022_S24.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-15A-bravo_S20.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-16B-20Dec2022_S25.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-18A-bravo_S18.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-1B-bravo_S17.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-2A-bravo_S21.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-2B-bravo_S22.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-3A-bravo_S19.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-3B-bravo_S23.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-8A-20Dec2022_S26.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-NA12878-20Dec2022_S29.vcf
s3://quantgene-portland-pgx/20230124-sp-pl42-hs2/pgx-pl42-dev0030/pgx-NA12878-3-bravo_S16.vcf