pg-main from prod server added

pgx-main/scripts/general/get_results_summary.sh

@@ -0,0 +1,33 @@
+#!/bin/bash
+
+
+while getopts s:o: option
+do
+case "${option}"
+in
+
+s) FILE1=${OPTARG};;
+o) FILE2=${OPTARG};;
+
+esac
+done
+
+
+for i in $(cat $FILE1); do 
+
+    if [[ $(grep "Possible" ${i}*alleles) && $(grep "*" ${i}*alleles) ]]; then
+    paste <(echo ${i}) <(grep "*" ${i}*alleles) <(grep "Possible" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
+
+
+    elif [[ $(grep "*" ${i}*alleles) ]]; then
+    paste <(echo ${i}) <(grep "*" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
+    
+
+    elif [[ $(grep "Possible" ${i}*alleles) ]]; then
+    paste <(echo ${i}) <(grep "Possible" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
+
+    else
+    paste <(echo ${i}) <(echo No_call) | column -s $'\t' -t -o $'\t' >> $FILE2
+    fi
+
+done