pg-main from prod server added

pgx-main/run_stellar.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+export NXF_DEFAULT_DSL=1
+
+while read g; do
+  echo "Run StellarPGx for all samples and gene: ${g^^}"
+  nextflow run main.nf -profile standard --build hg38 --gene $g
+  echo 'done. Parsing results...'
+  for f in results/$g/alleles/* ; do python3 stellar_parser.py $f; done
+done < genes.txt
+
+#rm -r results/*