pgx-main from prod added

2025-08-18 13:09:30 +02:00
parent 75c821b975
commit ce66f54509
918 changed files with 834526 additions and 0 deletions
--- a/pgx-main/resources/cyp2d6/res_b37/allele_def_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_b37/allele_def_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_b37/allele_def_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_b37/allele_def_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_b37/common_plus_core_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_b37/common_plus_core_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_b37/common_plus_core_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_b37/common_plus_core_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_b37/sv_test.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_b37/sv_test.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_b37/sv_test.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_b37/sv_test.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_b37/sv_test3.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_b37/sv_test3.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_b37/sv_test3.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_b37/sv_test3.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_b37/test3.bed
+++ b/pgx-main/resources/cyp2d6/res_b37/test3.bed
@@ -0,0 +1,12 @@
+22	42522300	42522800
+22	42522000	42526000
+22	42520000	42531500
+12	48235320	48298814
+22	42526000	42531500
+22	42538400	42540600
+22	42535500	42538100
+22	42535500	42536550
+22	42536550	42538400
+7	55086678	55279262
+22	42536550	42539583
+22	42539583	42540600
--- a/pgx-main/resources/cyp2d6/res_hg19/allele_def_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg19/allele_def_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg19/allele_def_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg19/allele_def_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg19/common_plus_core_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg19/common_plus_core_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg19/common_plus_core_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg19/common_plus_core_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg19/sv_test.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg19/sv_test.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg19/sv_test.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg19/sv_test.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg19/sv_test3.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg19/sv_test3.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg19/sv_test3.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg19/sv_test3.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg19/test3.bed
+++ b/pgx-main/resources/cyp2d6/res_hg19/test3.bed
@@ -0,0 +1,12 @@
+chr22	42522300	42522800
+chr22	42522000	42526000
+chr22	42520000	42531500
+chr12	48235320	48298814
+chr22	42526000	42531500
+chr22	42538400	42540600
+chr22	42535500	42538100
+chr22	42535490	42536560
+chr22	42536550	42538400
+chr7	55086678	55279262
+chr22	42536550	42539583
+chr22	42539583	42540600
--- a/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf_chr.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/allele_def_var.vcf_chr.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var_chr.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/common_plus_core_var_chr.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test3.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test3.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test3.vcf.gz.tbi
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test3.vcf.gz.tbi
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test3_chr.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test3_chr.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/sv_test_chr.vcf.gz
+++ b/pgx-main/resources/cyp2d6/res_hg38/sv_test_chr.vcf.gz
--- a/pgx-main/resources/cyp2d6/res_hg38/test3.bed
+++ b/pgx-main/resources/cyp2d6/res_hg38/test3.bed
@@ -0,0 +1,11 @@
+22	42126499	42126788
+22	42127841	42130273
+22	42126392	42130700
+19	50401732	50402786
+22	42139000	42142455
+22	42142465	42144575
+22	42139500	42140600
+22	42140600	42142500
+16	2084182	2084760
+22	42140600	42143600
+22	42143600	42144575