darren/reproduce_setup
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

pgx-main from prod added

Browse Source
This commit is contained in:
Darren Wight
2025-08-18 13:09:30 +02:00
parent 75c821b975
commit ce66f54509
918 changed files with 834526 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

0
pgx-main/database/cypor/b37/a_scores.dbs Normal file
View File

1128
pgx-main/database/cypor/b37/diplo_db_debugged2.dbs Normal file
View File

File diff suppressed because it is too large Load Diff

0
pgx-main/database/cypor/b37/genotypes4.dbs Normal file
View File

47
pgx-main/database/cypor/b37/haps_var_new.dbs Normal file
View File

@@ -0,0 +1,47 @@
*10 10.v1 75615006~C>T;75615269~C>CC
*11 11.v1 75608875~C>T
*1 1.v1 ref_diplo
*12 12.v1 75609714~A>G
*13 13.v1 75609748~A>G
*14 14.v1 75611597~A>G
*15 15.v1 75614502~T>C
*16 16.v1 75615113~G>A
*17 17.v1 75615265~T>C
*18 18.v1 75615507~C>T
*19 19.v1 75615690~CCTT>C
*20 20.v1 75610416~G>GTACGTGGACAAGC
*21 21.v1 75615048~G>GTGCCCATGTTCGTGCGC
*22 22.v1 75615068~C>CCCTTCAAGGCCACCACGCCTGTCATCATGGTGGGCCCCGGCACCGGGGTCCTTCAAGGCCACCACGCCTGTCATCATGGTGGGCCCCGGCACCGGGGT
*2 2.v1 75614497~G>A
*23 23.v1 75615118~G>GC
*24 24.v1 75614473~A>AGAGC
*25 25.v1 75583457~G>C
*26 26.v1 75614385~C>A
*27 27.v1 75615301~T>C
*28 28.v1 75615006~C>T
*29 29.v1 75610420~G>C
*30 30.v1 75614466~C>A
*31 31.v1 75610450~C>T
*32 32.v1 75614503~A>AATCGCC;75615006~C>T
*33 33.v1 75615006~C>T;75615495~CTAAAGCAAGACCGAGAGCACCTGT>C
*3 3.v1 75610925~G>A
*34 34.v1 75615304~A>G
*35 35.v1 75615309~G>C
*36 36.v1 75610876~C>T;75615006~C>T
*37 37.v1 75615006~C>T;75615552~G>A
*38 38.v1 75583440~TG>T
*39 39.v1 75615162~AG>A
*40 40.v1 75613149~CGTC>C;75615006~C>T
*42 42.v1 75614265~G>A
*43 43.v1 75615731~G>A
*44 44.v1 75608835~T>C
*4 4.v1 75614973~T>A
*45 45.v1 75609780~G>A
*46 46.v1 75610420~G>A
*47 47.v1 75613138~G>A
*48 48.v1 75614221~A>C
*5 5.v1 75612866~G>C
*6 6.v1 75615277~G>A
*7 7.v1 75615483~G>T
*8 8.v1 75610390~T>G
*9 9.v1 75614450~G>GC

0
pgx-main/database/cypor/hg38/a_scores.dbs Normal file
View File

1128
pgx-main/database/cypor/hg38/diplo_db_debugged2.dbs Normal file
View File

File diff suppressed because it is too large Load Diff

0
pgx-main/database/cypor/hg38/genotypes4.dbs Normal file
View File

47
pgx-main/database/cypor/hg38/haps_var_new.dbs Normal file
View File

@@ -0,0 +1,47 @@
*10 10.v1 75985688~C>T;75985951~C>CC
*11 11.v1 75979557~C>T
*1 1.v1 ref_diplo
*12 12.v1 75980396~A>G
*13 13.v1 75980430~A>G
*14 14.v1 75982279~A>G
*15 15.v1 75985184~T>C
*16 16.v1 75985795~G>A
*17 17.v1 75985947~T>C
*18 18.v1 75986189~C>T
*19 19.v1 75986372~CCTT>C
*20 20.v1 75981098~G>GTACGTGGACAAGC
*21 21.v1 75985730~G>GTGCCCATGTTCGTGCGC
*22 22.v1 75985750~C>CCCTTCAAGGCCACCACGCCTGTCATCATGGTGGGCCCCGGCACCGGGGTCCTTCAAGGCCACCACGCCTGTCATCATGGTGGGCCCCGGCACCGGGGT
*2 2.v1 75985179~G>A
*23 23.v1 75985800~G>GC
*24 24.v1 75985155~A>AGAGC
*25 25.v1 75954139~G>C
*26 26.v1 75985067~C>A
*27 27.v1 75985983~T>C
*28 28.v1 75985688~C>T
*29 29.v1 75981102~G>C
*30 30.v1 75985148~C>A
*31 31.v1 75981132~C>T
*32 32.v1 75985185~A>AATCGCC;75985688~C>T
*33 33.v1 75985688~C>T;75986177~CTAAAGCAAGACCGAGAGCACCTGT>C
*3 3.v1 75981607~G>A
*34 34.v1 75985986~A>G
*35 35.v1 75985991~G>C
*36 36.v1 75981558~C>T;75985688~C>T
*37 37.v1 75985688~C>T;75986234~G>A
*38 38.v1 75954122~TG>T
*39 39.v1 75985844~AG>A
*40 40.v1 75983831~CGTC>C;75985688~C>T
*42 42.v1 75984947~G>A
*43 43.v1 75986413~G>A
*44 44.v1 75979517~T>C
*4 4.v1 75985655~T>A
*45 45.v1 75980462~G>A
*46 46.v1 75981102~G>A
*47 47.v1 75983820~G>A
*48 48.v1 75984903~A>C
*5 5.v1 75983548~G>C
*6 6.v1 75985959~G>A
*7 7.v1 75986165~G>T
*8 8.v1 75981072~T>G
*9 9.v1 75985131~G>GC