incomplete download of pgx-main

pgx-main/scripts/general/get_results_summary.sh

@@ -1,33 +0,0 @@
-#!/bin/bash
-
-
-while getopts s:o: option
-do
-case "${option}"
-in
-
-s) FILE1=${OPTARG};;
-o) FILE2=${OPTARG};;
-
-esac
-done
-
-
-for i in $(cat $FILE1); do 
-
-    if [[ $(grep "Possible" ${i}*alleles) && $(grep "*" ${i}*alleles) ]]; then
-    paste <(echo ${i}) <(grep "*" ${i}*alleles) <(grep "Possible" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
-
-
-    elif [[ $(grep "*" ${i}*alleles) ]]; then
-    paste <(echo ${i}) <(grep "*" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
-    
-
-    elif [[ $(grep "Possible" ${i}*alleles) ]]; then
-    paste <(echo ${i}) <(grep "Possible" ${i}*alleles) | column -s $'\t' -t -o $'\t' >> $FILE2
-
-    else
-    paste <(echo ${i}) <(echo No_call) | column -s $'\t' -t -o $'\t' >> $FILE2
-    fi
-
-done