pgx-main from experiment server added

2025-08-18 13:12:15 +02:00
parent ce66f54509
commit 27ba410e5b
32 changed files with 138 additions and 19 deletions
--- a/pgx-main/main.bac.nf
+++ b/pgx-main/main.bac.nf
@@ -224,10 +224,10 @@ if (params.build=='b37') {
    debug38 = "--minimum_extract_score_over_homref=0"

    if (params.gene=='cyp2d6') {
-        chrom = "22"
-    	region_a1 = "22:42126000-42137500"
+        chrom = "chr22"
+    	region_a1 = "chr22:42126000-42137500"
    	region_a2 = "042126000-042137500"
-    	region_b1 = "22:42126300-42132400"
+    	region_b1 = "chr22:42126300-42132400"
    	region_b2 = "042126300-042132400"
 	transcript = "ENST00000645361"